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Title: | Clinical and genomic insights into circulating tumor DNA-based alterations across the spectrum of metastatic hormone-sensitive and castrate-resistant prostate cancer. | Authors: | Kwan E.M.;Horvath L.G.;Mahon K.L.;Fettke H.;Azad A.A.;Yu J.;Kohli M.;Tan W.;Zheng T.;Wang A.;Montesinos C.;Wong C.;Du P.;Jia S.;Yadav S. | Monash Health Department(s): | Oncology | Institution: | (Kohli) Division of Medical Oncology, Huntsman Cancer Institute, University of Utah, 2000 Circle of Hope Drive, Salt Lake City, UT 84112, United States (Tan) Department of Oncology, Mayo Clinic, Jacksonville, FL, United States (Zheng, Wang, Montesinos, Wong, Du, Jia, Yu) Predicine, Inc., Hayward, CA, United States (Yadav) Department of Oncology, Mayo Clinic, Rochester, MN, United States (Horvath, Mahon) Medical Oncology, Chris O'Brien Lifehouse, Australia (Horvath, Mahon) Royal Prince Alfred Hospital, Australia (Horvath, Mahon) University of Sydney, Australia (Horvath, Mahon) Garvan Institute for Medical Research, Australia (Kwan, Fettke, Azad) Department of Medicine, School of Clinical Sciences, Monash University, Australia (Kwan) Department of Medical Oncology, Monash Health, Australia (Azad) Department of Medical Oncology, Peter MacCallum Cancer Centre, Australia (Azad) Sir Peter MacCallum Department of Oncology, University of Melbourne, Australia | Issue Date: | 14-Jul-2020 | Copyright year: | 2020 | Publisher: | Elsevier B.V. | Place of publication: | Netherlands | Publication information: | EBioMedicine. 54 (no pagination), 2020. Article Number: 102728. Date of Publication: April 2020. | Journal: | EBioMedicine | Abstract: | Background: Metastatic prostate cancer is a clonally heterogeneous disease state characterized by progressive somatic perturbations. The aim of this study was to identify cell free DNA- (cfDNA-) based alterations and their associations with outcomes in progressive metastatic prostate cancer. Method(s): In this longitudinal prospective cohort study plasma cfDNA/circulating tumor DNA (ctDNA) was analyzed before, during, and after androgen deprivation therapy (ADT) in 4 independent patient groups ranging from untreated metastatic hormone sensitive prostate cancer (mHSPC) to metastatic castrate resistant prostate cancer (mCRPC). Next generation sequencing was performed on ctDNA and germline DNA to characterize alterations and associations with clinical outcomes were determined for each group. Finding(s): cfDNA yields were different in progressive mHSPC and mCRPC states (P < .001). In mHSPC, a higher than median ctDNA fraction was predictive of shorter time to ADT failure (HR, 2.29 [95% CI, 1.13-4.65]; Log-Rank P = .02). cfDNA, ctDNA taken with volume of metastatic disease in mHSPC and with alkaline phosphatase levels prognosticated survival better than clinical factors alone in mHSPC and mCRPC states (Log Rank P = 0.03). ctDNA-based AR, APC mutations were increased in mCRPC compared to mHSPC (P < .05).TP53 mutations, RB1 loss, and AR gene amplifications correlated with poorer survival in mCRPC. Mutations in multiple DNA repair genes (ATM, BRCA1, BRCA2, CHEK2) were associated with time to ADT treatment failure and survival in mHSPC. Interpretation(s): ctDNA fraction can further refine clinical prognostic factors in metastatic prostate cancer. Somatic ctDNA alterations have potential prognostic, predictive, and therapeutic implications in metastatic prostate cancer management. Funding(s): Several funding sources have supported this study. A full list is provided in the Acknowledgments. No funding was received from Predicine, Inc. during the conduct of the study.Copyright © 2020 The Author(s) | DOI: | http://monash.idm.oclc.org/login?url=http://dx.doi.org/10.1016/j.ebiom.2020.102728 | PubMed URL: | 32268276 [http://www.ncbi.nlm.nih.gov/pubmed/?term=32268276] | ISSN: | 2352-3964 (electronic) | URI: | https://repository.monashhealth.org/monashhealthjspui/handle/1/29189 | Type: | Article | Subjects: | metastasis adult androgen deprivation therapy article biochemical recurrence cancer prognosis cancer staging *castration resistant prostate cancer clinical outcome cohort analysis comparative study controlled study copy number variation disease exacerbation DNA extraction DNA repair follow up gene amplification gene expression gene frequency gene mutation genetic variability high throughput sequencing human major clinical study male middle aged outcome assessment overall survival plasma volume polymerase chain reaction priority journal prognostic assessment prospective study radiography retrospective study *sequence analysis single nucleotide polymorphism tumor volume alkaline phosphatase/ec [Endogenous Compound] androgen/ec [Endogenous Compound] androgen receptor/ec [Endogenous Compound] ATM protein/ec [Endogenous Compound] BRCA1 protein/ec [Endogenous Compound] BRCA2 protein/ec [Endogenous Compound] checkpoint kinase 2/ec [Endogenous Compound] chloroplast DNA/ec [Endogenous Compound] *circulating tumor DNA/ec [Endogenous Compound] cyclin dependent kinase 6/ec [Endogenous Compound] genomic DNA/ec [Endogenous Compound] *hormone/ec [Endogenous Compound] prostate specific antigen/ec [Endogenous Compound] protein p53/ec [Endogenous Compound] unclassified drug uvomorulin/ec [Endogenous Compound] DNA fraction DNA rearrangement germline DNA/ec [Endogenous Compound] *metastatic hormone/ec [Endogenous Compound] metastasis androgen deprivation therapy biochemical recurrence cancer cancer staging castration resistant prostate cancer copy number variation DNA DNA repair gene amplification gene expression gene frequency gene mutation genetic variability high throughput sequencing plasma volume polymerase chain reaction prognostic assessment radiography sequence analysis single nucleotide polymorphism tumor volume alkaline phosphatase androgen androgen receptor ATM protein BRCA1 protein BRCA2 protein checkpoint kinase 2 chloroplast DNA circulating tumor DNA cyclin dependent kinase 6 genomic DNA hormone prostate specific antigen protein p53 uvomorulin DNA fraction DNA rearrangement germline DNA metastatic hormone comparative study controlled study copy number variation disease exacerbation DNA extraction DNA repair follow up gene amplification gene expression gene frequency gene mutation genetic variability high throughput sequencing human major clinical study male metastasis middle aged outcome assessment overall survival plasma volume polymerase chain reaction prognostic assessment prospective study radiography retrospective study *sequence analysis single nucleotide polymorphism tumor volume priority journal adult androgen deprivation therapy Article biochemical recurrence cancer prognosis cancer staging *castration resistant prostate cancer clinical outcome cohort analysis |
Type of Clinical Study or Trial: | Observational study (cohort, case-control, cross sectional or survey) |
Appears in Collections: | Articles |
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